{"id":381,"date":"2018-10-23T20:58:43","date_gmt":"2018-10-23T19:58:43","guid":{"rendered":"http:\/\/pageperso.math.univ-toulouse.fr\/maugis\/?page_id=381"},"modified":"2020-10-09T14:04:54","modified_gmt":"2020-10-09T13:04:54","slug":"single-cell-rna-seq","status":"publish","type":"page","link":"https:\/\/perso.math.univ-toulouse.fr\/maugis\/single-cell-rna-seq\/","title":{"rendered":"Single Cell RNA-seq"},"content":{"rendered":"<p>Sont report\u00e9es sur cette page les actions men\u00e9es autour du traitement des donn\u00e9es Single Cell RNA-seq.<\/p>\n<ul>\n<li>Shiny app <em><strong>ASTEC-sc<\/strong><\/em> :ASTEC-sc : A Shiny application To Explore Clusterings of single cell RNA seq data. This application allows to visualize cells in dimensionality reduction methods and expressed genes, to compare cell clusterings and to determine marker genes.Cette application a \u00e9t\u00e9 d\u00e9velopp\u00e9e par Nicolas Enjalbert-Courrech dans le cadre de son stage de M1, co-encadr\u00e9 avec\u00a0S.\u00a0D\u00e9jean. Elle sera prochainement disponible.<\/li>\n<\/ul>\n<ul>\n<li>Projet <strong>Single Cell<\/strong> (TTIL 2018 INP-INSA-ISAE) port\u00e9 par Sandrine Laguerre et Cathy Maugis-Rabusseau.\n<ul>\n<li>Journ\u00e9e toulousaine Single Cell RNA-seq du 18 octobre 2018 \u00e0 l&#8217;INSA Toulouse:cette premi\u00e8re journ\u00e9e a rassembl\u00e9 une quarantaine de participants<br \/>\norateurs: Delphine Labourdette (LISBP), Jean-Jacques Fourni\u00e9 (CRCT), C\u00e9line Mazzotti (CRCT-IUCT) et Cathy Maugis-Rabusseau (INSA\/IMT)<br \/>\nL&#8217;ensemble du programme et les pr\u00e9sentations sont accessibles \u00e0 l&#8217;adresse suivante : <a href=\"https:\/\/indico.math.cnrs.fr\/event\/3780\/timetable\" target=\"_blank\">Lien<\/a><\/li>\n<li>Journ\u00e9e toulousaine SingleCell RNA-seq du 4 juillet 2019 \u00e0 l&#8217;INSA Toulouse(<a href=\"https:\/\/scrnaseqstattou.sciencesconf.org\" target=\"_blank\">Lien<\/a>)<\/li>\n<li>Sujet de stage &#8220;Analyses statistiques de donn\u00e9es single-cell RNA-seq. Application \u00e0 l\u2019\u00e9tude des cellules stromales m\u00e9senchymateuses&#8221; propos\u00e9 par le STROMALab et l&#8217;IMT \u00a0 \u00a0 : <a href=\"http:\/\/perso.math.univ-toulouse.fr\/maugis\/files\/2018\/11\/SujetStage-SingleCell-STROMAlab-2019.pdf\">sujetstage-singlecell-stromalab-2019<\/a><\/li>\n<\/ul>\n<\/li>\n<\/ul>\n","protected":false},"excerpt":{"rendered":"<p>Sont report\u00e9es sur cette page les actions men\u00e9es autour du traitement des donn\u00e9es Single Cell RNA-seq. Shiny app ASTEC-sc :ASTEC-sc : A Shiny application To Explore Clusterings of single cell RNA seq data. This application allows to visualize cells in dimensionality reduction methods and expressed genes, to compare cell clusterings and to determine marker genes.Cette [&hellip;]<\/p>\n","protected":false},"author":128,"featured_media":0,"parent":0,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":{"footnotes":""},"class_list":["post-381","page","type-page","status-publish","hentry"],"_links":{"self":[{"href":"https:\/\/perso.math.univ-toulouse.fr\/maugis\/wp-json\/wp\/v2\/pages\/381","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/perso.math.univ-toulouse.fr\/maugis\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/perso.math.univ-toulouse.fr\/maugis\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/perso.math.univ-toulouse.fr\/maugis\/wp-json\/wp\/v2\/users\/128"}],"replies":[{"embeddable":true,"href":"https:\/\/perso.math.univ-toulouse.fr\/maugis\/wp-json\/wp\/v2\/comments?post=381"}],"version-history":[{"count":9,"href":"https:\/\/perso.math.univ-toulouse.fr\/maugis\/wp-json\/wp\/v2\/pages\/381\/revisions"}],"predecessor-version":[{"id":408,"href":"https:\/\/perso.math.univ-toulouse.fr\/maugis\/wp-json\/wp\/v2\/pages\/381\/revisions\/408"}],"wp:attachment":[{"href":"https:\/\/perso.math.univ-toulouse.fr\/maugis\/wp-json\/wp\/v2\/media?parent=381"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}