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Author Archives: Kim-Anh Lê Cao
New publication with multiple integration
Our paper ‘Novel Multivariate Methods for Integration of Genomics and Proteomics Data: Applications in a Kidney Transplant Rejection Study‘ has just been accepted in OMICS: a journal of integrative Biology, from a collaboration with scientists from the PRevention Of Organ Failure … Continue reading
Toulouse tutorial, 6-7 October 2014
We are running our second tutorial in Toulouse, hosted by the National Institute for Agricultural Research (INRA) and organised by the Plate-forme bio-informatique GenoToul. You can download the following files mixOmics-material, R scripts to run the command lines and presentation … Continue reading
ECCB’14 Tutorial Sept 7
We ran our first mixOmics tutorial as part of the ECCB’14 conference in the beautiful city of Strasbourg. This one-day tutorial was a success and will be followed by other tutorials in 2014 and 2015. The tutorial material can be … Continue reading
perf() function tutorial
The old function valid() has been superseded by the perf() function. The update of the website is on its way, in the meantime, please download the following file: Running_perf_function4.
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mixOmics 5.0-2 update
The major changes of this new update is the perf() function that supersedes valid() and offers a variable stability measure across the different folds. The pls() and spls() functions have been modified and are now following the same framework coding. … Continue reading
ECCB’14 Tutorial on mixOmics
ECCB Tutorial T04. Multivariate methodologies for the exploration of large biological data sets. Application in R using the mixOmics package Date: Sunday Sept 7, 2014 Venue: FORUM building, Faculté de Médecine, 4, rue Kirschleger, Strasbourg Time: 9am – 5.30pm (registration starts … Continue reading
Version 4.1-3 is on CRAN now
Changes in 4.1 ================ New features: ————- – New S3 method valid for objects of class psl, spls, plsda and splsda – New select.var function to directly extract the selected variables from spls, spca, sipca – New data set vac18 … Continue reading
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Article published explaining correlation circle plots, relevance networks and CIM
Our manuscript ‘Insightful graphicalt outputs to explore relationships between two “omics” data sets has been published and explains how to interpret Correlation Circle plots, how relevance networks and CIM are generated from rCCA and sPLS. Check this very colourful manuscript!
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Another presentation about mixOmics
Another general presentation of mixOmics dating Dec 2012, which presents some preliminary but exciting results about time course data and the generalisation of PLS to multi block data sets using the approach of our collaborator Arthur Tenenhaus and colleagues. Go.
General presentation about mixOmics
A new general presentation about mixOmics is available (and should be updated for major update of the package) in the . Lê Cao K.-A. Unravelling `omics’ data with the mixOmics R package, Illustration on several studies. General presentation on mixOmics (last updated 05/04/2012) … Continue reading
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